HyDE is a MATLAB-based tool for quantifying new hypocotyl growth in light-grown Arabidopsis seedlings in time-resolved image stacks.

HyDE v. 1.0 for Windows
HyDE v. 1.0 for Mac
User Guide

If you use this software, please cite:

Cole, B., Kay, S. A. and Chory, J. (2011), Automated analysis of hypocotyl growth dynamics during shade avoidance in Arabidopsis.
The Plant Journal, 65: 991-1000.

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